Hi LadyGrey,
I used to work in a wheat flour mill. If you are referring to cleaning the mill area (not the milling line):
Floor: It is daily sweeping. Not with broom, but with a squarish dry drag mop. Water is a big no in flour mills so we tend not to wet mop the floor. However, some flour mills that I've visited do mop their floor with water on alternate days. (Kindly note that we coat our flour mill floor with industrial coating, such as epoxy, which allows easy cleaning)
Ceiling and overhead fixtures: As determined how fast the fixtures gets spiderwebs, usually once a week.
Louvre for ventilation: As determined how fast the fixtures gets dirty, usually once a week as well.
Packing and bulk loading line: Daily, before and after operations.
Magnets in the operations line: Brushing off metals, whereby you would need to stop the line, a miller would know the frequency.
Operations line: Flush with products
Cleaning of the spelt wheat: Technical process involving size and weight and you would need professionals (people would builds the mill) to advice on this.
The flour milling process generates a lot of heat, and the heat itself maybe able to destroy some non-spore forming pathogens, but please verify with your miller on how high the temperature will go.
On annual basis, we would stop the mill carry out a fumigation for 3 days or more, depending what type of fumigant is allowed in your country.
Hope this helps.
Cheers.