The challenge you're likely to find with pasteurisation is that the pH of coffee is very likely to be above 4.5, so for a shelf-stable drink you're into a region where there are potentially some significant pathogen considerations - IIRC a lot of shelf stable coffee products use a UHT / aseptic process, or a retort-type approach for cans, both of which will need higher temperatures than you're likely to be working at with a traditional pasteurisation process.
I have also seen acidification used to bring the pH down, but there is definitely an organoleptic trade-off here - there will be a noticeable impact on flavour profile. Coffee is naturally somewhat acidic, but adding more acid to drop the pH will affect the taste.
Not sure what the purpose of the double pasteurisation would be? Things like C. bot will potentially survive a second pasteurisation just as easily as they'll survive the first one (at least in terms of what you can reasonably validate). If your final thermal process gives adequate control then you'd only need that final process, IMO, unless there is a very specific process reason you want to do a prior pasteurisation step.
If this is a relatively different product to your current range, it might be the sort of thing where you'd want to consider partnering with a copacker if shelf-stable is the ultimate goal, unless you want to make an investment in new kit. Will be quite a big investment for e.g. an aseptic tetra setup though...
Otherwise I agree with kingstudruler1 - it's the sort of thing where getting expert assistance with your specific product/process is likely to be a very sensible step.