You mentioned SQF specialist, but said you're certified under ARB, so not sure exactly which standard we should consider. But from the SQF standpoint:
11.7.3.2 Containers, equipment, and other utensils made of glass, porcelain, ceramics, laboratory glassware, or other similar materials shall not be permitted in food processing /contact zones (except where the product is contained in packaging made from these materials, or measurement instruments with glass dial covers are used, or MIG thermometers are required under regulation). Where glass objects or similar material are required in food handling/contact zones, they shall be listed in a glass inventory, including details of their location and condition.
Based on that, I could suggest you label and number each glass container for a daily inspection. Each one needs should be verified as intact and not broken, and a daily log checking them would be great in a SQF auditor's mind. When one is cracked, you record it on the log and whatever glass breakage incident form you have, show it got replaced with a new one relabeled to the correct number after knowing there is no hazard from the breakage.
And honestly, this is one of those logs auditors love to see findings on: say a glass broke in November 2023, and you show them a investigation that the glass was only cracked and didn't post a hazard, so you discarded it and placed a new jar to take it's place. Auditors love internal findings that are well documented. They hate reviewing records that show 0 problems through the whole year. So while it'll be a pain to document glass checks for these inventoried bottles, if/when something happens, they'll love to see that you handled it thoroughly and it'll give them confidence your FM program is operating well.