We scored a 94% on our SQF audit that was done a month ago. This was my very first SQF audit! 
2.4.3.7 :The food safety team shall develop and document a flow diagram covering the scope of each food safety plan. The flow diagram shall include every step in the process, all raw material, packaging material, service inputs (e.g. water, steam, gasses as appropriate), scheduled process delays, and all process outputs including waste and rework. Each flow diagram shall be confirmed by the food safety team during all stages and hours of operation.
(we were missing a waste arrow)
2.7.2.3 :The food fraud vulnerability assessment and mitigation plan shall be reviewed and verified at least annually.
11.2.2.1 :Floors shall be constructed of smooth, dense impact resistant material that can be effectively graded, drained, impervious to liquid and easily cleaned.
11.2.11.5 :Calibration shall be performed according to regulatory requirements and/or to the equipment manufacturers recommended schedule.
( I am still sour about the calibration deduction, only because calibrations were done and recorded as per the policy, that was approved by the consultant the year prior. To have a person from a third party company come in to do the exact thing that I do, and charge and exorbitant amount of money to calibrate 2 scales is not worth it. But it is what it is.)
11.2.13.1 :The methods and responsibility for the cleaning of the food handling and processing equipment and environment, storage areas, staff amenities and toilet facilities shall be documented and implemented. Consideration shall be given to: i. What is to be cleaned; ii. How it is to be cleaned; iii. When it is to be cleaned; iv. Who is responsible for the cleaning; v. Methods used to confirm the correct concentrations of detergents and sanitizers, and vi. The responsibility and methods used to verify the effectiveness of the cleaning and sanitation program.
11.7.5.3 :All glass objects or similar material in food handling/contact zones shall be listed in a glass register including details of their location.